Friday, July 26, 2013

uBiome: Ethical Lapse or Not?

Jessica Richman at TEDMED

uBiome?s CEO, Jessica Richman, seems to me to be a great saleswoman who also excels at sounding innocent and playing the misunderstood victim in the ethical controversy surrounding her company. I think this was well illustrated in her recent guest blog in Scientific American with Dr. Zachary Apte, co-founder and Chief Scientific Officer of uBiome. The picture is a little less rosy if you look back at the origins and history of the discussions about her company?s perceived ethical lapses.

I was intending to write about uBiome before this, as I was disturbed by Richman?s appearance at TEDMED. Admittedly, I was already put off by her telling twitter handle of ?@venturejessica.? Her hubris was further evidenced by the title of her TEDMED talk, ?Could a citizen scientist win a Nobel Prize?? Fortunately, her talk was a bit more restrained, though still touting the potential of her as yet untested product.

Richman and Apte?s recent blog has shown that they seem to have learned little from the heated discussions about uBiome. Their business is part of the UCSF?s Quantitative Biosciences Institute start-up incubator. While they say that lawyers provided by UCSF told them that they did not require Institutional Review Board (IRB) ethics approval?something that ?didn?t sound like a great system? to them?proceeding without ethical review seems to reflect a lack of understanding of basic research ethics as well as a desire for expediency over more careful volunteer protections.

Richman and Apte complain that? IRBs ?are provided free of charge to members of that [academic] institution? but that? they would have had to pay ?thousands of dollars? for an external IRB review. Welcome to the real world. At the non-academic institution where I did research for ~25 years, there were fees for review. It was accepted as a cost of doing business, an expected start-up investment cost, to cover the administrative costs of the host institution.

uBiome proclaims their innocence because they had not yet processed specimens; they were crowdfunding their project and intending to get IRB approval after that step. But their 2/17/13 e-mail solicitation in Science Citizen Newsletter states ?Please sign up to get your friends or your loved ones? microbiomes sequenced.? Their home page certainly implies benefit: ?Dozens of health conditions are correlated with the microbiome ? from asthma to diabetes, autism to depression, irritable bowel, Crohn?s, chronic sinusitis, heart disease, and more. We help you investigate your personal microbiome and learn how you correlate with others.?For just $89, you can learn what?s in your gut, nose, mouth, skin, ?genitals ? or, sample anything!?

Under ?How it Works,? we learn that ?Our online survey lets you ask and answer questions about your health, lifestyle, demographics, social connections, and more! Then you can see how you correlate with other people in our dataset.? It then states, ?our team will analyze the results to explore scientific research questions such as how the microbiome influences human health and disease.?

Under FAQs, we find: ?YES! You can definitely sequence your child, at any age. You will need to give your permission to have the sequencing done. If your child is over the age of 13, they will also need to give their assent (non-binding approval) as well as parental permission.? ?You will be able to opt-in to make your data available to the public.?

There is, not surprisingly, a medical disclaimer, ?uBiome is not a diagnostic test. However, we can give you valuable information about your microbiome that you can use to learn more about your health.? Then their site notes an upgraded kit, ubiome DELTA ^ FIVE, in which for $1,337 ?you can sample all 5 areas at 5 timepoints and see how your microbiome responds to your experiments???we hope to provide as useful and actionable data as possible.?

Ethical concerns

uBiome (and specifically @ventureJessica) sounds dismissive of the concerns of various bloggers but fails to either note that they are well-positioned to criticize or to respond directly to the substance of their concerns. For example, DrugMonkey is an NIH-funded researcher, who wrote, ?A little reminder of why we have IRBs. Did I mention it is still Black History Month??
Janet Stemwedel, aka @docfreeride, an Associate Professor of Philosophy at San Jose State University, raised other ethical and practical concerns.
Nick Evans, a bioethicist, writes about dual-use research, which might have both benevolent and harmful applications, and criticizes uBiome as a cautionary tale for citizen science.
DNLee, The Urban Scientist, leant a valuable perspective on the need for self-policing in citizen science.
Melissa Bates, PhD, a scientist in Pediatric Critical Care Medicine at the University of Wisconsin School of Medicine and Public Health, writes about Translational Research at BoundaryLayerPhysiology.com, and is clearly well-versed in research ethics as well as a thoughtful writer. Her criticisms, which mirror mine, included:
?1) Participation in the uBiome project requires the payment of a fee.
[Typically, research participants are not charged for participation, and thus are more free to withdraw consent without any penalties.]
2) There is no clear statement about what will be done with the data or samples.
3) There is no apparent plan for how your identity will be protected.
4) It?s not clear what conflicts [of interest] the major players in the project might have.
5) The benefits you?ll receive are grossly over-stated
6) There is no statement as to what your risks of participation are.
7) Children are included, but it?s not apparent how they are protected.?
I encourage all to read the thoughtful discussion and comments in BoundaryLayer?s ethical shenanigans and final thoughts posts.

IRBs

ComraddePhysioproffe (another NIH-funded researcher) provides great information about IRB ethics and oversight, and uBiome?s? IRB compliance (or lack thereof), among other posts.

Kelly Hills (@rocza), a bioethicist, and I co-moderated a session at Scio13 (Science Online) on ethics and citizen science, as part of a track that discussed potential problems with citizen science, including the difficulties obtaining IRB and ethical reviews. Holly Menninger (@DrHolly), I, and others hope to continue that discussion this year. DrHolly made an excellent comment about consent and citizen science. I have participated in two of her studies. In each case, there was a clear consent that could be a model of how things should be done.

Yes, there are problems with some IRBs, whether they are associated with academic institutions or are independent, for profit, enterprises. For example the University of Minnesota?s IRB has failed in its oversight of psychiatric trials there, as I have reviewed in the Markingson case. This included having an IRB chair who stated, shockingly, that the IRB is not responsible for protecting clinical trial subjects. Even the Johns Hopkins? IRB received scathing criticism for failures of oversight in an asthma study that led to the death of a healthy volunteer, Ellen Roche. The GAO has criticized the? workloads of IRBs as being too heavy precluding thorough review. This load on IRBs is well described in Trials and Tribulations. And IRBs are subject to conflicts of interest, as I also noted. I, too, have encountered questions as to whether an IRB approval was necessary for a given project.
But having at least an attempt at ethical and independent review is an important step, as is transparency. If there are flaws in the system, we should attempt to correct them, not ignore any attempt at oversight.

On the one hand, @ventureJessica seems to attempt being head of a naive young citizen start-up; on the other hand, uBiome has used their link to UCSF for PR and to UCSF?s legal team as an excuse for not having an IRB.

What uBiome?s management seems to be missing is that their skirting the rules hurts their image and fosters mistrust and, perhaps more importantly, may hurt the citizen science movement more broadly. Rather than whining about being misunderstood and mischaracterized, they should reflect on these criticisms?most from more experienced researchers?and try to respond. As a start towards openness, I would ask that they post their consent form?or do you only get to see that after you buy a kit? It is not just IRBs that need more transparency, Jessica.

Richman and Apte?s? IRB 2.0 is not a novel concept?there has been discussion about how to make IRBs more accessible to those not affiliated with academic institutions. There is likely widespread agreement that we need alternative IRBs and better standards for IRBs.

To return to the original question posed at TEDMED, ?Could a citizen scientist win a Nobel Prize??
Perhaps. But not for this.

Related articles

Source: http://rss.sciam.com/~r/sciam/basic-science/~3/cDEa-MhEIQQ/post.cfm

Michael Shannon Chrissy Amphlett Java stevie wonder 2013 NFL Mock Draft paleo diet paleo diet

Sunday, July 21, 2013

Samsung nudges into BlackBerry?s territory, close to scoring U.S. government contract

Samsung FBI Navy Contracts

Samsung?s plans to make its Galaxy smartphones enterprise-friendly seem to be bearing some fruit. The Wall Street Journal reports that Samsung is nearing a deal to supply mobile devices to the United States Navy and the Federal Bureau of Investigation, two U.S. government agencies that have high standards for mobile device security. The Journal?s unnamed sources say that although the deals have not yet been finalized, Samsung will likely secure a big order from the FBI and a smaller order from the Navy.

[More from BGR: iPhone 5S: New leaked photos, purported full specs point to biggest ?S? upgrade ever]

Samsung earlier this year announced its intentions to make a major push into the enterprise when it unveiled its KNOX mobile security suite aimed at showing businesses and governments that mobile devices based on Android could actually be secure enough to use for work. To that end KNOX?has several key enterprise features including?an application container that works similarly to?BlackBerry?s?Balance feature that separates work application data from personal application data; the ability to implement separate VPNs to individual applications rather than relying on one VPN for the entire device; and a security-enhanced version of Android that?s been customized to help IT departments enforce more than 300 IT policies and have access to more than 700 mobile device management APIs.

[More from BGR: The Boy Genius Report: iPhone 5S to feature indestructible LiquidMetal case]

The Journal also notes that ?Samsung has invested heavily in its enterprise and government push, hiring executives away from BlackBerry, creating an enterprise-focused division within the company, and collaborating with third-party software firms to beef up the security on its devices,? so it seems that the company is taking its push into the enterprise very seriously.

This article was originally published on BGR.com

Source: http://news.yahoo.com/samsung-nudges-blackberry-territory-close-scoring-u-government-115045491.html

discovery shuttle allure jane goodall saturday night fever glamping forgetting sarah marshall taraji p. henson

Rovio Now Lets Users Worldwide Sync Angry Birds, The Croods Gameplay Across Devices

rovio-acctWhat makes Candy Crush so addictive? A combination of perfected game mechanics, built-in social media virality, and the maddening timer that tells you can't play right now - which somehow makes you crave the game even more. But the other thing Candy Crush has going for it is that it syncs your gameplay across all platforms - something that not all game publishers, big or small, bother to include. Case in point: Angry Birds maker Rovio is?announcing today that it has finally extended its "Rovio Account" feature worldwide, allowing users of select Rovio titles to play cross-platform.

Source: http://feedproxy.google.com/~r/Techcrunch/~3/xvtYII8Seaw/

metro north taco bell taco bell Breezy Point Seaside Heights nj transit PSEG

Comic-Con 2013 Clues: Vin Diesel Knows An Awful Lot About Marvel's Vision

The 'Riddick' star surrenders to MTV News' prodding about 'The Avengers 2.' Sorta.
By Ryan J. Downey, with reporting by Josh Horowitz

Source: http://www.mtv.com/news/articles/1710935/vin-diesel-marvel-2013-san-diego-comic-con.jhtml

Shailene Woodley Kim Kardashian baby name Erik Spoelstra college board bill russell michael jordan stephen colbert

NFL roundup: Marcus Lattimore on non-football injury list

Sorry, Readability was unable to parse this page for content.

Source: http://www.delawareonline.com/article/20130721/SPORTS02/307210057/1022/rss0203

Honey Boo Boo Child Nathan Adrian London 2012 Synchronized Swimming London 2012 hurdles Taylor Kinney Beach Volleyball Olympics 2012 Jessica Ennis

Saturday, July 20, 2013

Tornado watch and warnings downgraded to severe thunderstorm warning as of 3.55pm

Update at 6.20pm: Clean up under way after severe storm downs trees; some homes damaged, especially in Gravenhurst

Weather update as of 6:20 pm: Environment Canada has ended the tornado and severe storm warnings for Muskoka and Parry Sound. The public is encouraged to continue to monitor local media reports and be aware of changing weather patterns.

Widespread power outage is being experienced, a significant number of trees are down and extensive damage has been reported. ?Most roads are now passable but motorists are encouraged to watch for debris, hydro and clean up crews.

The public is advised to stay away from downed trees and wires.

The public is asked to be patient while crews work diligently to clean up the debris and return power to the affected areas.? Homeowners in Gravenhurst are reporting damage. Earlier this afternoon a downspout was reported in nearby Housey?s Rapids. There have been citizen?s reports of possible tornado activity in Gravenhurst. Those reports are unconfirmed.

4pm: Tornado warning ended for Muskoka; severe thunderstorm warning remains ? follow Environment Canada and listen for radio reports for more updates.

Here?s the latest update from Environment Canada:?

Bracebridge ? Gravenhurst ? Port Carling ? Port Severn
As of 3:55 PM EDT Friday 19 July 2013
Severe thunderstorm warning for these regions continued.

As of? 3:25 PM EDT Friday 19 July 2013 Tornado warning for
Port Carling ? Port Severn ended.

Huntsville ? Baysville
3:55 PM EDT Friday 19 July 2013
Severe thunderstorm warning for
Huntsville ? Baysville continued

Update as of 3:20pm:
At 3:20 EDT, meteorologists are tracking a line of severe thunderstorms extending from southern Lake Huron through Lake Simcoe and east northeastward to the Ottawa Valley and into Quebec.

These are dangerous storms. A roof has been reported blown down in the Petawawa area and trees have been blown down. Wind damage has been reported in Petawawa, Pembroke, Gravenhurst, Bracebridge, Barrie, and Coldwater.

At 3:20 EDT, meteorologists are tracking a line of severe thunderstorms extending from southern Lake Huron through Lake Simcoe and east northeastward to the Ottawa Valley and into Quebec.

These are dangerous storms. A roof has been reported blown down in the Petawawa area and trees have been blown down. Wind damage has been reported in Petawawa, Pembroke, Gravenhurst, Bracebridge, Barrie, and Coldwater. This is all resulting from an unstable airmass across Southern Ontario. Scattered thunderstorms are expected to continue this afternoon. Some of these storms will be locally severe. There is also the risk for isolated tornadoes. The greatest threat for isolated tornadoes will be over northern portions of Southern Ontario, including the Ottawa Valley. Hence a tornado watch has been issued for those regions.

One MNW reader called in to report a downspout in Housey?s Rapids near Gravenhurst. Power?s out and trees are reported downed on hydro lines there. In Bracebridge, some pockets are without power (for example, some stores on the east side of Manitoba Street were out of power at 3.30 pm and the traffic lights at Manitoba and Taylor were out while other traffic lights were on). Be careful out there!

Note: There are multiple power outages in various areas of Muskoka. If you can access Internet, click on Outages on the Hydro One site (Hydro One also offers mobile outage reporting apps for iPhones, BlackBerry and Android.)

Severe thunderstorm watch upgraded to tornado watch alert for Muskoka and parts of Parry Sound.

Posted July 19, 11.10am: Just before 11am, Environment Canada has upgraded its severe thunderstorm watch to a tornado watch. This is an alert to the potential development of severe thunderstorms capable of producing tornadoes. Isolated tornadoes are possible this afternoon and early evening. Environment Canada recommends monitoring? weather conditions and listening for updated bulletins. Right now in Muskoka Lakes we are seeing high wind activity.

You can follow the weather warnings by clicking here for Environment Canada.

Here is more information provided from Environment Canada: At 11:00 EDT, meteorologists are tracking a line of severe thunderstorms likely producing damaging winds, large hail, and heavy downpours. There is also the risk for a tornado.

  • Emergency Management Ontario recommends that you take cover immediately, if threatening weather approaches.
  • Strong wind gusts and hail can damage property and cause injuries. Local downpours can cause flash floods.
  • Go indoors and move away from windows and skylights. Avoid areas of the building that could be affected by falling debris such as tree limbs. Stay on the lower floor of your home or building and if the storm is particularly severe go to the basement.
  • Avoid driving through water on roads. Even shallow fast moving water across a road can sweep a vehicle away.
  • Remember, severe thunderstorms can produce tornadoes.
  • In Canada, lightning kills up to 10 people every year. Remember, when thunder roars, go indoors.

Upgraded Tornado Watch alerts for these regions:

Bracebridge ? Gravenhurst
10:50 AM EDT Friday 19 July 2013
Tornado watch for
Bracebridge ? Gravenhurst upgraded from Severe thunderstorm watch
Isolated tornadoes possible this afternoon and early evening.

Port Carling ? Port Severn
10:50 AM EDT Friday 19 July 2013
Tornado watch for
Port Carling ? Port Severn upgraded from Severe thunderstorm watch
Isolated tornadoes possible this afternoon and early evening.

Tornado watch for
Huntsville ? Baysville upgraded from Severe thunderstorm watch.
Isolated tornadoes possible this afternoon and early evening.

Just after 11am, the tornado watch for the Town of Parry Sound, Rosseau and Killbear has been changed to a Severe Thunderstorm Watch.

Muskoka, tornado

Tornado watch in effect

Source: http://muskokanewswatch.com/opensession/tornado-watch-for-muskoka-upgraded-from-severe-thunderstorm-warning-at-11am/

dr seuss History Channel The Bible alex smith alex smith The Bible History Channel Melissa King Heat Harlem Shake

Chick Flick Friday: Wedding Crashers

Sorry, Readability was unable to parse this page for content.

Source: http://987ampradio.cbslocal.com/2013/07/19/chick-flick-friday-wedding-crashers/

chevy volt christina hendricks camp david hawaii weather the jerk lake havasu halo 4